FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index6_2.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 22902433 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 50 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 5090795 | 2.6060188 | 5.471805 | 1 |
| CCTGG | 5079685 | 2.5785296 | 6.3073955 | 1 |
| CTTCT | 5024640 | 2.551236 | 5.5620613 | 1 |
| CTGGA | 4749120 | 2.4759998 | 8.710891 | 1 |
| TCCAG | 4669580 | 2.390699 | 6.0431495 | 2 |
| CTGCT | 4644430 | 2.3578868 | 5.2361946 | 1 |
| CTCCT | 4676215 | 2.331281 | 7.8634214 | 1 |
| CTGGG | 4415760 | 2.2826073 | 8.357709 | 1 |
| CAGGA | 4289140 | 2.2550914 | 5.4557643 | 1 |
| CTTCA | 4307620 | 2.2056653 | 5.5670214 | 1 |
| CTCCA | 4382975 | 2.2035642 | 8.254292 | 1 |
| CCCAG | 4314465 | 2.1688447 | 7.345514 | 1 |
| CTCTG | 4036410 | 2.049207 | 6.480058 | 1 |
| CTGCA | 3940390 | 2.0173733 | 5.012898 | 1 |
| TGGAA | 3504615 | 1.876635 | 5.0709615 | 2 |
| CTGGC | 3667765 | 1.8618166 | 5.237714 | 1 |
| CTGAA | 3539210 | 1.8610392 | 5.4693503 | 1 |
| CTCAG | 3425975 | 1.7540067 | 5.8589883 | 1 |
| CTGGT | 3240915 | 1.6755159 | 5.144064 | 1 |
| CTTGG | 3144645 | 1.6257454 | 5.0640078 | 1 |
| CTCCC | 3157800 | 1.54575 | 5.229572 | 1 |